Week 5 Project Update

Below is the weekly update email I sent out this morning.

PROJECT: Command Line Topological Query Application for BioSQL

Last Week I:

• Tried to work with Bio::Phylo .. decided to stick with Bio::Tree
• Finished PhyExport - a command line program to export trees from the PhyloDB
  

This week:

• Start PhyOpt - a phylogeny optimizer program to calculate nested sets
• Extend PhyExport to export subtrees based on nested set values calculated by Ph