This is the project blog for the Google Summer of Code project "A Perl-based Command Line Interface to a Topological Query Application for BioSQL in Support of High Throughput Classification and Analysis of LTR Retrotransposons in Plant Genomes". This project is mentored by Hilmar Lapp of the National Evolutionary Synthesis Center (NESCent) Phyloinformatics Group.
Thursday, May 17, 2007
Transitive Closure makes my brain hurt
The more I read about transitive closure the more my brain hurts. I am currently trying to implement a simple transitive closure algorithm in PERL (Warshall's) for basic classification of repeat families.
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