Thursday, June 7, 2007
PhyImport: Test Newick Format Tree
I added a randomly generated tree to the code repository. This is a simple newick format tree with 26 leaf nodes. The image links to the *.tre file.
The file is randtree_26.tre.
This will serve as a test file for the development of PhyImport.
The tree was generate using RandTree.pl. I have been having trouble with the NEXUS file I originally wanted to use.
I have stopped trying to get parseTreeePG.pl to work with the MySQL schema. I have moved on to using the Bio::TreeI object as I originally proposed. Since the tree above was generated with Bio::Tree::RandomFactory it works with Bio::TreeI.