Monday, June 25, 2007

Week 5 Project Update

Below is the weekly update email I sent out this morning.

PROJECT: Command Line Topological Query Application for BioSQL

Last Week I:
  • Tried to work with Bio::Phylo .. decided to stick with Bio::Tree
  • Finished PhyExport - a command line program to export trees from the PhyloDB
This week:
  • Start PhyOpt - a phylogeny optimizer program to calculate nested sets
  • Extend PhyExport to export subtrees based on nested set values calculated by Ph

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